While having "your" bike on the dyno to be tuned is certainly not a bad thing.......below are a couple items to consider also.
1) The stock M109R of each model year all run the exact same ECU tuning.....they are not specifically tuned to each bike and yet they all run just fine. A ECU tune by mail will run just fine bike to bike same as the stock ECU tune does bike to bike if mods are the same.
Most inconstancies will come from poor maintenance or other alterations to the bike by individual owners.
2) 95% of all dyno tuners you would take your bike to are going to want to install a Power Commander to do the fuel tuning.
They will normally download a generic map off the Dynojet website and then usually only make changes to the 100% throttle (WOT) position.
The rest of the fuel mapping you will still be running a generic map set. So most times you are not really getting a complete "personal" tune even if you take "your" bike to a dyno tuner.
Unless you can find a tuner with an Eddy-Current dyno (not an inertia dyno) willing to take the time to custom tune the entire map set and you are willing to pay for this time, you will likely be running a generic map set even after paying much more and getting much less than you would from an ECU tune by mail.
Now if you can find a local tuner who can custom tune your ECU directly and you are willing to pay the cost for this then I would agree 100% with the comment above.
Unfortunately not very many guys will have someone in their area you can take your bike to have this done, and half of those individuals will not want to pay the high cost for a custom tune.
There is a thread on this forum where a guy from New Zealand did just that, he dropped his bike off at a local dyno tuner, they kept his bike for a week and did a custom ECU tune. When he picked his bike up they handed him a bill for $1000 and a dyno graph showing he now pulls 100 HP on the top end.

......so your outcome doing this not guaranteed to be a better option.
But he says his bike runs great and he is happy with the result......in the end that is all that really matters.
I would dare to say that only a very small percentage of riders run WOT more than 1% of their entire ridding time and some guys never see 100% WOT or even take the bike much over 120 mph.
So IMHO having a bike that runs well thought the entire map set is much more important than a large WOT HP number any day.
Everyone gets hung up on that WOT HP number that they ride in less than 1% of the time and which is often over inflated anyway, but they give zero thought to the rest of the map set they ride in 99% of the time. Unless you are drag racing the bike, to me this thought process is not rational.
Just some food for though.